NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,929.7 |
Mean read quality |
13.6 |
Median read length |
3,899.0 |
Median read quality |
13.9 |
Number of reads |
41,851.0 |
Read length N50 |
3,906.0 |
STDEV read length |
141.5 |
Total bases |
164,463,159.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
41851 (100.0%) 164.5Mb |
>Q7 |
41851 (100.0%) 164.5Mb |
>Q10 |
40126 (95.9%) 157.8Mb |
>Q12 |
35103 (83.9%) 138.1Mb |
>Q15 |
9086 (21.7%) 35.8Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
18.4 (3901) |
2 |
18.3 (3912) |
3 |
18.1 (3859) |
4 |
18.1 (3861) |
5 |
18.1 (4051) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4995 (7.3) |
2 |
4944 (8.5) |
3 |
4920 (7.8) |
4 |
4906 (7.2) |
5 |
4904 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation