NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,679.6 |
Mean read quality |
13.5 |
Median read length |
3,867.0 |
Median read quality |
13.9 |
Number of reads |
47,728.0 |
Read length N50 |
3,892.0 |
STDEV read length |
818.9 |
Total bases |
175,622,064.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
47700 (99.9%) 175.5Mb |
>Q7 |
47423 (99.4%) 174.6Mb |
>Q10 |
45242 (94.8%) 167.1Mb |
>Q12 |
39263 (82.3%) 145.8Mb |
>Q15 |
10075 (21.1%) 37.5Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
30.5 (25) |
2 |
29.1 (28) |
3 |
28.4 (12) |
4 |
26.1 (28) |
5 |
25.6 (33) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8488 (14.9) |
2 |
8415 (11.3) |
3 |
8300 (11.5) |
4 |
8298 (12.6) |
5 |
8246 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation