NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,956.8 |
Mean read quality |
13.6 |
Median read length |
3,952.0 |
Median read quality |
14.0 |
Number of reads |
37,778.0 |
Read length N50 |
3,960.0 |
STDEV read length |
152.6 |
Total bases |
149,478,240.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
37778 (100.0%) 149.5Mb |
>Q7 |
37778 (100.0%) 149.5Mb |
>Q10 |
36283 (96.0%) 143.6Mb |
>Q12 |
31691 (83.9%) 125.6Mb |
>Q15 |
7981 (21.1%) 31.7Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
18.9 (4267) |
2 |
18.5 (3856) |
3 |
18.5 (4099) |
4 |
18.1 (4196) |
5 |
18.0 (3850) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4993 (13.7) |
2 |
4939 (13.9) |
3 |
4918 (14.0) |
4 |
4880 (9.9) |
5 |
4870 (14.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation