NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,579.1 |
Mean read quality |
13.5 |
Median read length |
3,890.0 |
Median read quality |
13.9 |
Number of reads |
45,484.0 |
Read length N50 |
3,938.0 |
STDEV read length |
974.3 |
Total bases |
162,792,437.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
45453 (99.9%) 162.7Mb |
>Q7 |
45223 (99.4%) 162.0Mb |
>Q10 |
43136 (94.8%) 155.1Mb |
>Q12 |
37247 (81.9%) 135.0Mb |
>Q15 |
9349 (20.6%) 34.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
20.0 (203) |
2 |
19.5 (1688) |
3 |
19.3 (160) |
4 |
19.2 (249) |
5 |
19.2 (162) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8606 (12.0) |
2 |
8591 (13.9) |
3 |
8505 (12.5) |
4 |
8441 (11.1) |
5 |
8386 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation