NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 3,579.1
Mean read quality 13.5
Median read length 3,890.0
Median read quality 13.9
Number of reads 45,484.0
Read length N50 3,938.0
STDEV read length 974.3
Total bases 162,792,437.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 45453 (99.9%) 162.7Mb
>Q7 45223 (99.4%) 162.0Mb
>Q10 43136 (94.8%) 155.1Mb
>Q12 37247 (81.9%) 135.0Mb
>Q15 9349 (20.6%) 34.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 20.0 (203)
2 19.5 (1688)
3 19.3 (160)
4 19.2 (249)
5 19.2 (162)
Top 5 longest reads and their mean basecall quality score
1 8606 (12.0)
2 8591 (13.9)
3 8505 (12.5)
4 8441 (11.1)
5 8386 (8.5)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality plot using a kernel density estimation