NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,944.3 |
Mean read quality |
12.7 |
Median read length |
3,924.0 |
Median read quality |
12.9 |
Number of reads |
83,688.0 |
Read length N50 |
3,932.0 |
STDEV read length |
153.9 |
Total bases |
330,092,907.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
83688 (100.0%) 330.1Mb |
>Q7 |
83688 (100.0%) 330.1Mb |
>Q10 |
77561 (92.7%) 306.3Mb |
>Q12 |
59619 (71.2%) 235.9Mb |
>Q15 |
3868 (4.6%) 15.3Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
18.1 (3893) |
2 |
17.8 (3819) |
3 |
17.8 (3984) |
4 |
17.8 (3904) |
5 |
17.6 (4100) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4978 (10.0) |
2 |
4952 (7.6) |
3 |
4950 (8.1) |
4 |
4896 (12.4) |
5 |
4874 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation