NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,382.2 |
Mean read quality |
12.5 |
Median read length |
3,862.0 |
Median read quality |
12.8 |
Number of reads |
109,816.0 |
Read length N50 |
3,904.0 |
STDEV read length |
1,162.9 |
Total bases |
371,424,362.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
109689 (99.9%) 371.1Mb |
>Q7 |
108371 (98.7%) 367.1Mb |
>Q10 |
98992 (90.1%) 338.4Mb |
>Q12 |
74366 (67.7%) 258.4Mb |
>Q15 |
5223 (4.8%) 17.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
21.1 (137) |
2 |
20.6 (297) |
3 |
19.9 (128) |
4 |
19.9 (124) |
5 |
19.4 (203) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8941 (14.8) |
2 |
8775 (14.0) |
3 |
8662 (7.3) |
4 |
8572 (11.6) |
5 |
8566 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation