NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 3,382.2
Mean read quality 12.5
Median read length 3,862.0
Median read quality 12.8
Number of reads 109,816.0
Read length N50 3,904.0
STDEV read length 1,162.9
Total bases 371,424,362.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 109689 (99.9%) 371.1Mb
>Q7 108371 (98.7%) 367.1Mb
>Q10 98992 (90.1%) 338.4Mb
>Q12 74366 (67.7%) 258.4Mb
>Q15 5223 (4.8%) 17.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 21.1 (137)
2 20.6 (297)
3 19.9 (128)
4 19.9 (124)
5 19.4 (203)
Top 5 longest reads and their mean basecall quality score
1 8941 (14.8)
2 8775 (14.0)
3 8662 (7.3)
4 8572 (11.6)
5 8566 (12.3)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality plot using a kernel density estimation