NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,954.9 |
Mean read quality |
12.8 |
Median read length |
3,929.0 |
Median read quality |
13.0 |
Number of reads |
79,371.0 |
Read length N50 |
3,937.0 |
STDEV read length |
154.0 |
Total bases |
313,905,517.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
79371 (100.0%) 313.9Mb |
>Q7 |
79371 (100.0%) 313.9Mb |
>Q10 |
73788 (93.0%) 292.2Mb |
>Q12 |
57493 (72.4%) 228.0Mb |
>Q15 |
4313 (5.4%) 17.1Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
18.5 (3905) |
2 |
18.2 (3864) |
3 |
18.1 (4079) |
4 |
18.0 (3969) |
5 |
17.9 (3857) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4989 (13.3) |
2 |
4962 (7.9) |
3 |
4930 (8.2) |
4 |
4921 (11.7) |
5 |
4920 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation