NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,949.2 |
Mean read quality |
12.7 |
Median read length |
3,930.0 |
Median read quality |
13.0 |
Number of reads |
49,314.0 |
Read length N50 |
3,938.0 |
STDEV read length |
156.2 |
Total bases |
194,748,745.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
49314 (100.0%) 194.7Mb |
>Q7 |
49314 (100.0%) 194.7Mb |
>Q10 |
45644 (92.6%) 180.5Mb |
>Q12 |
35314 (71.6%) 139.9Mb |
>Q15 |
2381 (4.8%) 9.4Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
18.1 (3824) |
2 |
17.9 (3914) |
3 |
17.5 (3874) |
4 |
17.5 (4125) |
5 |
17.4 (4031) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4999 (7.5) |
2 |
4988 (13.0) |
3 |
4951 (13.5) |
4 |
4947 (12.4) |
5 |
4919 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation