NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,372.4 |
Mean read quality |
12.5 |
Median read length |
3,865.0 |
Median read quality |
12.8 |
Number of reads |
65,128.0 |
Read length N50 |
3,909.0 |
STDEV read length |
1,168.6 |
Total bases |
219,639,221.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
65018 (99.8%) 219.3Mb |
>Q7 |
64134 (98.5%) 216.7Mb |
>Q10 |
58489 (89.8%) 199.5Mb |
>Q12 |
44224 (67.9%) 153.4Mb |
>Q15 |
3208 (4.9%) 10.5Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
20.5 (167) |
2 |
19.3 (312) |
3 |
18.8 (2350) |
4 |
18.7 (303) |
5 |
18.7 (888) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8504 (11.9) |
2 |
8392 (11.4) |
3 |
8273 (11.6) |
4 |
8219 (13.9) |
5 |
8212 (13.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation