NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,606.5 |
Mean read quality |
10.3 |
Median read length |
4,624.0 |
Median read quality |
10.3 |
Number of reads |
729.0 |
Read length N50 |
4,634.0 |
STDEV read length |
194.9 |
Total bases |
3,358,137.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
729 (100.0%) 3.4Mb |
>Q7 |
729 (100.0%) 3.4Mb |
>Q10 |
453 (62.1%) 2.1Mb |
>Q12 |
8 (1.1%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.7 (4568) |
2 |
12.4 (4548) |
3 |
12.2 (4718) |
4 |
12.2 (4581) |
5 |
12.1 (4576) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4996 (12.1) |
2 |
4986 (9.5) |
3 |
4982 (9.4) |
4 |
4978 (9.8) |
5 |
4976 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation