NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,475.5 |
Mean read quality |
9.9 |
Median read length |
4,630.0 |
Median read quality |
9.9 |
Number of reads |
870.0 |
Read length N50 |
4,642.0 |
STDEV read length |
675.4 |
Total bases |
3,893,675.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
870 (100.0%) 3.9Mb |
>Q7 |
870 (100.0%) 3.9Mb |
>Q10 |
365 (42.0%) 1.6Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.2 (4265) |
2 |
11.2 (2147) |
3 |
11.1 (4609) |
4 |
11.0 (2977) |
5 |
11.0 (4684) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
9317 (9.8) |
2 |
8683 (9.0) |
3 |
5397 (9.1) |
4 |
5372 (10.3) |
5 |
5300 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation