NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,552.1 |
Mean read quality |
10.0 |
Median read length |
4,645.0 |
Median read quality |
10.1 |
Number of reads |
505.0 |
Read length N50 |
4,652.0 |
STDEV read length |
631.3 |
Total bases |
2,298,801.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
505 (100.0%) 2.3Mb |
>Q7 |
505 (100.0%) 2.3Mb |
>Q10 |
270 (53.5%) 1.2Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.1 (4611) |
2 |
11.1 (3306) |
3 |
11.1 (3062) |
4 |
11.1 (4614) |
5 |
11.0 (4713) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
9484 (9.8) |
2 |
9041 (9.5) |
3 |
5397 (9.2) |
4 |
5396 (9.2) |
5 |
5377 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation