NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,582.9 |
Mean read quality |
10.2 |
Median read length |
4,620.0 |
Median read quality |
10.1 |
Number of reads |
547.0 |
Read length N50 |
4,626.0 |
STDEV read length |
220.6 |
Total bases |
2,506,825.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
547 (100.0%) 2.5Mb |
>Q7 |
547 (100.0%) 2.5Mb |
>Q10 |
303 (55.4%) 1.4Mb |
>Q12 |
4 (0.7%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.8 (4518) |
2 |
12.8 (4573) |
3 |
12.5 (4537) |
4 |
12.3 (4588) |
5 |
12.0 (4556) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4992 (9.3) |
2 |
4976 (10.0) |
3 |
4949 (10.0) |
4 |
4948 (10.5) |
5 |
4947 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation