NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,361.2 |
Mean read quality |
10.2 |
Median read length |
4,604.0 |
Median read quality |
10.1 |
Number of reads |
623.0 |
Read length N50 |
4,621.0 |
STDEV read length |
783.5 |
Total bases |
2,717,038.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
623 (100.0%) 2.7Mb |
>Q7 |
623 (100.0%) 2.7Mb |
>Q10 |
329 (52.8%) 1.5Mb |
>Q12 |
5 (0.8%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.8 (4518) |
2 |
12.8 (4573) |
3 |
12.5 (4537) |
4 |
12.3 (4588) |
5 |
12.1 (1345) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5574 (10.0) |
2 |
5397 (9.0) |
3 |
5353 (9.2) |
4 |
5303 (10.0) |
5 |
5227 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation