NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,623.0 |
Mean read quality |
9.8 |
Median read length |
4,647.0 |
Median read quality |
9.8 |
Number of reads |
461.0 |
Read length N50 |
4,655.0 |
STDEV read length |
192.0 |
Total bases |
2,131,218.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
461 (100.0%) 2.1Mb |
>Q7 |
461 (100.0%) 2.1Mb |
>Q10 |
168 (36.4%) 0.8Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.2 (4644) |
2 |
11.1 (4774) |
3 |
11.1 (4728) |
4 |
11.0 (4344) |
5 |
10.9 (4670) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4996 (10.0) |
2 |
4974 (9.6) |
3 |
4959 (9.7) |
4 |
4951 (9.5) |
5 |
4933 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation