NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,619.6 |
Mean read quality |
9.8 |
Median read length |
4,650.0 |
Median read quality |
9.9 |
Number of reads |
648.0 |
Read length N50 |
4,657.0 |
STDEV read length |
195.5 |
Total bases |
2,993,505.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
648 (100.0%) 3.0Mb |
>Q7 |
648 (100.0%) 3.0Mb |
>Q10 |
260 (40.1%) 1.2Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.3 (4514) |
2 |
11.0 (4549) |
3 |
10.9 (3589) |
4 |
10.8 (4484) |
5 |
10.8 (4637) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4996 (10.1) |
2 |
4993 (9.0) |
3 |
4988 (9.1) |
4 |
4985 (9.2) |
5 |
4977 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation