NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,405.7 |
Mean read quality |
9.8 |
Median read length |
4,633.0 |
Median read quality |
9.9 |
Number of reads |
735.0 |
Read length N50 |
4,654.0 |
STDEV read length |
801.2 |
Total bases |
3,238,188.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
735 (100.0%) 3.2Mb |
>Q7 |
735 (100.0%) 3.2Mb |
>Q10 |
296 (40.3%) 1.3Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.3 (4514) |
2 |
11.0 (4549) |
3 |
10.9 (3589) |
4 |
10.8 (4484) |
5 |
10.8 (4637) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8409 (10.4) |
2 |
5763 (9.3) |
3 |
5757 (10.2) |
4 |
5296 (9.3) |
5 |
5251 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation