NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,607.0 |
Mean read quality |
9.8 |
Median read length |
4,644.5 |
Median read quality |
9.7 |
Number of reads |
196.0 |
Read length N50 |
4,647.0 |
STDEV read length |
213.6 |
Total bases |
902,980.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
196 (100.0%) 0.9Mb |
>Q7 |
196 (100.0%) 0.9Mb |
>Q10 |
66 (33.7%) 0.3Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.0 (4541) |
2 |
10.7 (3617) |
3 |
10.6 (4670) |
4 |
10.6 (4491) |
5 |
10.6 (4680) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4961 (9.5) |
2 |
4953 (9.3) |
3 |
4949 (9.5) |
4 |
4947 (10.4) |
5 |
4941 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation