NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,596.7 |
Mean read quality |
10.2 |
Median read length |
4,607.0 |
Median read quality |
10.2 |
Number of reads |
366.0 |
Read length N50 |
4,614.0 |
STDEV read length |
179.0 |
Total bases |
1,682,399.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
366 (100.0%) 1.7Mb |
>Q7 |
366 (100.0%) 1.7Mb |
>Q10 |
218 (59.6%) 1.0Mb |
>Q12 |
6 (1.6%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.0 (4689) |
2 |
12.3 (4308) |
3 |
12.2 (4415) |
4 |
12.1 (4612) |
5 |
12.0 (4248) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4996 (10.1) |
2 |
4987 (10.1) |
3 |
4986 (11.0) |
4 |
4964 (10.2) |
5 |
4954 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation