NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,488.1 |
Mean read quality |
10.2 |
Median read length |
4,605.0 |
Median read quality |
10.2 |
Number of reads |
427.0 |
Read length N50 |
4,622.0 |
STDEV read length |
618.5 |
Total bases |
1,916,427.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
427 (100.0%) 1.9Mb |
>Q7 |
427 (100.0%) 1.9Mb |
>Q10 |
254 (59.5%) 1.1Mb |
>Q12 |
8 (1.9%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.0 (4689) |
2 |
12.5 (2767) |
3 |
12.3 (4308) |
4 |
12.2 (4415) |
5 |
12.1 (4612) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5522 (10.2) |
2 |
5334 (10.1) |
3 |
5327 (9.7) |
4 |
5325 (11.0) |
5 |
5322 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation