NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,587.8 |
Mean read quality |
9.9 |
Median read length |
4,614.0 |
Median read quality |
9.8 |
Number of reads |
398.0 |
Read length N50 |
4,621.0 |
STDEV read length |
206.2 |
Total bases |
1,825,934.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
398 (100.0%) 1.8Mb |
>Q7 |
398 (100.0%) 1.8Mb |
>Q10 |
166 (41.7%) 0.8Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
10.9 (4821) |
2 |
10.8 (4316) |
3 |
10.8 (4613) |
4 |
10.8 (4552) |
5 |
10.8 (4753) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4984 (10.1) |
2 |
4970 (9.1) |
3 |
4961 (9.4) |
4 |
4950 (9.6) |
5 |
4944 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation