NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,482.7 |
Mean read quality |
9.9 |
Median read length |
4,612.0 |
Median read quality |
9.8 |
Number of reads |
454.0 |
Read length N50 |
4,633.0 |
STDEV read length |
696.2 |
Total bases |
2,035,161.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
454 (100.0%) 2.0Mb |
>Q7 |
454 (100.0%) 2.0Mb |
>Q10 |
192 (42.3%) 0.8Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.2 (1928) |
2 |
10.9 (4821) |
3 |
10.9 (848) |
4 |
10.8 (4316) |
5 |
10.8 (4613) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
9312 (10.6) |
2 |
5846 (10.3) |
3 |
5388 (10.5) |
4 |
5323 (9.4) |
5 |
5308 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation