NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,221.7 |
Mean read quality |
10.2 |
Median read length |
4,551.0 |
Median read quality |
10.1 |
Number of reads |
457.0 |
Read length N50 |
4,579.0 |
STDEV read length |
951.1 |
Total bases |
1,929,337.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
457 (100.0%) 1.9Mb |
>Q7 |
457 (100.0%) 1.9Mb |
>Q10 |
243 (53.2%) 1.0Mb |
>Q12 |
7 (1.5%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.5 (4399) |
2 |
12.3 (4503) |
3 |
12.2 (4743) |
4 |
12.2 (5078) |
5 |
12.2 (3176) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5588 (9.1) |
2 |
5517 (9.9) |
3 |
5440 (9.8) |
4 |
5268 (10.0) |
5 |
5190 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation