NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,185.6 |
Mean read quality |
9.9 |
Median read length |
4,551.0 |
Median read quality |
9.9 |
Number of reads |
634.0 |
Read length N50 |
4,597.0 |
STDEV read length |
1,038.0 |
Total bases |
2,653,669.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
634 (100.0%) 2.7Mb |
>Q7 |
634 (100.0%) 2.7Mb |
>Q10 |
269 (42.4%) 1.1Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.3 (3445) |
2 |
11.1 (2304) |
3 |
11.0 (4052) |
4 |
11.0 (4639) |
5 |
11.0 (4531) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
7083 (9.1) |
2 |
6626 (10.7) |
3 |
6197 (10.4) |
4 |
5783 (9.3) |
5 |
5732 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation