NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,570.4 |
Mean read quality |
9.8 |
Median read length |
4,580.0 |
Median read quality |
9.7 |
Number of reads |
389.0 |
Read length N50 |
4,590.0 |
STDEV read length |
202.3 |
Total bases |
1,777,882.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
389 (100.0%) 1.8Mb |
>Q7 |
389 (100.0%) 1.8Mb |
>Q10 |
133 (34.2%) 0.6Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.0 (4679) |
2 |
10.9 (4882) |
3 |
10.8 (4702) |
4 |
10.8 (4975) |
5 |
10.7 (4565) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4992 (10.5) |
2 |
4985 (10.0) |
3 |
4983 (9.1) |
4 |
4983 (10.0) |
5 |
4975 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation