NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,815.2 |
Mean read quality |
10.1 |
Median read length |
4,475.0 |
Median read quality |
10.0 |
Number of reads |
288.0 |
Read length N50 |
4,562.0 |
STDEV read length |
1,388.8 |
Total bases |
1,098,767.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
288 (100.0%) 1.1Mb |
>Q7 |
288 (100.0%) 1.1Mb |
>Q10 |
144 (50.0%) 0.5Mb |
>Q12 |
1 (0.3%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.3 (4721) |
2 |
12.0 (4525) |
3 |
12.0 (5003) |
4 |
11.9 (4651) |
5 |
11.7 (4310) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5567 (9.0) |
2 |
5407 (10.3) |
3 |
5391 (10.1) |
4 |
5341 (10.4) |
5 |
5278 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation