NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,564.0 |
Mean read quality |
9.9 |
Median read length |
4,547.0 |
Median read quality |
9.8 |
Number of reads |
522.0 |
Read length N50 |
4,567.0 |
STDEV read length |
561.9 |
Total bases |
2,382,404.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
522 (100.0%) 2.4Mb |
>Q7 |
522 (100.0%) 2.4Mb |
>Q10 |
210 (40.2%) 1.0Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.6 (3968) |
2 |
11.0 (4534) |
3 |
11.0 (4855) |
4 |
10.9 (4593) |
5 |
10.9 (4469) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8401 (9.2) |
2 |
8208 (10.1) |
3 |
7773 (10.4) |
4 |
6681 (9.3) |
5 |
6404 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation