NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,968.6 |
Mean read quality |
10.2 |
Median read length |
3,982.0 |
Median read quality |
10.4 |
Number of reads |
49,331.0 |
Read length N50 |
3,986.0 |
STDEV read length |
142.9 |
Total bases |
195,777,326.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
49331 (100.0%) 195.8Mb |
>Q7 |
49331 (100.0%) 195.8Mb |
>Q10 |
33663 (68.2%) 134.4Mb |
>Q12 |
69 (0.1%) 0.3Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.4 (3970) |
2 |
12.4 (3870) |
3 |
12.4 (3527) |
4 |
12.3 (4118) |
5 |
12.3 (4118) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4999 (8.4) |
2 |
4999 (8.1) |
3 |
4998 (9.7) |
4 |
4997 (8.8) |
5 |
4996 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation