NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,852.0 |
Mean read quality |
9.9 |
Median read length |
3,750.0 |
Median read quality |
10.1 |
Number of reads |
93,323.0 |
Read length N50 |
3,920.0 |
STDEV read length |
1,363.8 |
Total bases |
266,161,054.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
93323 (100.0%) 266.2Mb |
>Q7 |
93031 (99.7%) 265.7Mb |
>Q10 |
48949 (52.5%) 157.0Mb |
>Q12 |
234 (0.3%) 0.4Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
15.0 (29) |
2 |
13.7 (301) |
3 |
13.2 (303) |
4 |
13.2 (136) |
5 |
13.1 (147) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8190 (9.7) |
2 |
7949 (9.3) |
3 |
7825 (8.5) |
4 |
7689 (8.7) |
5 |
7645 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation