NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,968.7 |
Mean read quality |
10.2 |
Median read length |
3,981.0 |
Median read quality |
10.4 |
Number of reads |
31,667.0 |
Read length N50 |
3,986.0 |
STDEV read length |
144.3 |
Total bases |
125,675,807.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
31667 (100.0%) 125.7Mb |
>Q7 |
31667 (100.0%) 125.7Mb |
>Q10 |
21611 (68.2%) 86.2Mb |
>Q12 |
55 (0.2%) 0.2Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.6 (4113) |
2 |
12.5 (4184) |
3 |
12.4 (3993) |
4 |
12.4 (4114) |
5 |
12.4 (4012) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4996 (7.7) |
2 |
4994 (7.8) |
3 |
4991 (8.7) |
4 |
4990 (8.7) |
5 |
4985 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation