NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,781.6 |
Mean read quality |
9.8 |
Median read length |
3,644.0 |
Median read quality |
10.1 |
Number of reads |
62,415.0 |
Read length N50 |
3,914.0 |
STDEV read length |
1,388.8 |
Total bases |
173,612,281.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
62415 (100.0%) 173.6Mb |
>Q7 |
62211 (99.7%) 173.3Mb |
>Q10 |
32552 (52.2%) 102.2Mb |
>Q12 |
182 (0.3%) 0.3Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.8 (6) |
2 |
13.2 (302) |
3 |
13.1 (390) |
4 |
13.1 (292) |
5 |
12.9 (360) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
11398 (9.0) |
2 |
8296 (10.8) |
3 |
8258 (10.1) |
4 |
8057 (9.6) |
5 |
7954 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation