NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,042.5 |
Mean read quality |
9.0 |
Median read length |
4,024.0 |
Median read quality |
9.1 |
Number of reads |
7,984.0 |
Read length N50 |
4,041.0 |
STDEV read length |
203.1 |
Total bases |
32,275,065.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
7984 (100.0%) 32.3Mb |
>Q7 |
7984 (100.0%) 32.3Mb |
>Q10 |
1375 (17.2%) 5.6Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.6 (4092) |
2 |
11.5 (3945) |
3 |
11.5 (4099) |
4 |
11.5 (3855) |
5 |
11.5 (3860) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5000 (8.5) |
2 |
4953 (7.5) |
3 |
4900 (7.7) |
4 |
4875 (9.4) |
5 |
4845 (7.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation