NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,746.4 |
Mean read quality |
8.7 |
Median read length |
3,349.5 |
Median read quality |
8.7 |
Number of reads |
16,448.0 |
Read length N50 |
3,925.0 |
STDEV read length |
1,450.9 |
Total bases |
45,173,274.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
16448 (100.0%) 45.2Mb |
>Q7 |
16293 (99.1%) 45.0Mb |
>Q10 |
2007 (12.2%) 6.5Mb |
>Q12 |
1 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.4 (133) |
2 |
12.0 (463) |
3 |
11.9 (244) |
4 |
11.7 (298) |
5 |
11.7 (312) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
7627 (7.7) |
2 |
7573 (7.5) |
3 |
7431 (8.3) |
4 |
7347 (8.1) |
5 |
7315 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation