NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,040.5 |
Mean read quality |
9.1 |
Median read length |
4,031.0 |
Median read quality |
9.2 |
Number of reads |
7,531.0 |
Read length N50 |
4,047.0 |
STDEV read length |
197.2 |
Total bases |
30,428,889.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
7531 (100.0%) 30.4Mb |
>Q7 |
7531 (100.0%) 30.4Mb |
>Q10 |
1454 (19.3%) 5.9Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.6 (3876) |
2 |
11.4 (4067) |
3 |
11.4 (3951) |
4 |
11.4 (4166) |
5 |
11.3 (3847) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4999 (8.7) |
2 |
4982 (7.6) |
3 |
4978 (8.0) |
4 |
4921 (7.6) |
5 |
4908 (8.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation