NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,700.0 |
Mean read quality |
8.8 |
Median read length |
3,195.0 |
Median read quality |
8.8 |
Number of reads |
15,842.0 |
Read length N50 |
3,930.0 |
STDEV read length |
1,462.7 |
Total bases |
42,774,006.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
15842 (100.0%) 42.8Mb |
>Q7 |
15718 (99.2%) 42.6Mb |
>Q10 |
2243 (14.2%) 7.0Mb |
>Q12 |
2 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.3 (237) |
2 |
12.1 (405) |
3 |
12.0 (273) |
4 |
11.7 (455) |
5 |
11.6 (774) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
7968 (8.1) |
2 |
7908 (9.0) |
3 |
7573 (7.3) |
4 |
7555 (8.1) |
5 |
7488 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation