NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,157.3 |
Mean read quality |
9.5 |
Median read length |
4,191.0 |
Median read quality |
9.6 |
Number of reads |
55,304.0 |
Read length N50 |
4,193.0 |
STDEV read length |
133.2 |
Total bases |
229,917,775.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
55304 (100.0%) 229.9Mb |
>Q7 |
55304 (100.0%) 229.9Mb |
>Q10 |
20210 (36.5%) 84.8Mb |
>Q12 |
5 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.3 (4225) |
2 |
12.1 (4239) |
3 |
12.1 (4205) |
4 |
12.0 (4264) |
5 |
12.0 (4210) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4994 (9.2) |
2 |
4994 (7.8) |
3 |
4978 (7.5) |
4 |
4965 (8.7) |
5 |
4960 (7.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation