NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,830.0 |
Mean read quality |
9.4 |
Median read length |
3,892.0 |
Median read quality |
9.5 |
Number of reads |
106,033.0 |
Read length N50 |
4,151.0 |
STDEV read length |
1,500.4 |
Total bases |
300,070,341.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
106033 (100.0%) 300.1Mb |
>Q7 |
105721 (99.7%) 299.5Mb |
>Q10 |
34978 (33.0%) 102.5Mb |
>Q12 |
100 (0.1%) 0.1Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.9 (262) |
2 |
12.9 (261) |
3 |
12.8 (576) |
4 |
12.7 (1463) |
5 |
12.7 (259) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8632 (10.3) |
2 |
8455 (9.5) |
3 |
8130 (9.9) |
4 |
8118 (9.2) |
5 |
8095 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation