NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,959.4 |
Mean read quality |
9.5 |
Median read length |
3,970.0 |
Median read quality |
9.7 |
Number of reads |
18,726.0 |
Read length N50 |
3,973.0 |
STDEV read length |
122.0 |
Total bases |
74,143,577.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
18726 (100.0%) 74.1Mb |
>Q7 |
18726 (100.0%) 74.1Mb |
>Q10 |
6851 (36.6%) 27.4Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.9 (4129) |
2 |
11.8 (3904) |
3 |
11.8 (3971) |
4 |
11.8 (4047) |
5 |
11.7 (3773) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4992 (8.1) |
2 |
4985 (8.5) |
3 |
4969 (8.4) |
4 |
4934 (9.3) |
5 |
4866 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation