NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,313.5 |
Mean read quality |
9.2 |
Median read length |
2,024.0 |
Median read quality |
9.2 |
Number of reads |
53,057.0 |
Read length N50 |
3,875.0 |
STDEV read length |
1,393.7 |
Total bases |
122,746,420.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
53057 (100.0%) 122.7Mb |
>Q7 |
52742 (99.4%) 122.3Mb |
>Q10 |
14676 (27.7%) 36.2Mb |
>Q12 |
264 (0.5%) 0.1Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.8 (307) |
2 |
13.7 (295) |
3 |
13.5 (176) |
4 |
13.5 (309) |
5 |
13.5 (300) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
7560 (8.4) |
2 |
7267 (8.7) |
3 |
7179 (7.8) |
4 |
7151 (8.5) |
5 |
7053 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation