NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,985.9 |
Mean read quality |
19.7 |
Median read length |
3,920.0 |
Median read quality |
19.9 |
Number of reads |
16,072.0 |
Read length N50 |
3,936.0 |
STDEV read length |
239.5 |
Total bases |
64,062,162.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
16072 (100.0%) 64.1Mb |
>Q7 |
16072 (100.0%) 64.1Mb |
>Q10 |
15521 (96.6%) 61.9Mb |
>Q12 |
14232 (88.6%) 56.7Mb |
>Q15 |
12403 (77.2%) 49.5Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
36.3 (3851) |
2 |
35.4 (3843) |
3 |
35.0 (3998) |
4 |
35.0 (3848) |
5 |
34.9 (3987) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4992 (16.9) |
2 |
4990 (18.8) |
3 |
4990 (24.5) |
4 |
4981 (11.1) |
5 |
4968 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation