NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
General summary |
|
Mean read length |
2,969.2 |
Mean read quality |
21.9 |
Median read length |
3,790.0 |
Median read quality |
21.2 |
Number of reads |
28,549.0 |
Read length N50 |
3,870.0 |
STDEV read length |
1,318.9 |
Total bases |
84,768,358.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
28549 (100.0%) 84.8Mb |
>Q7 |
28549 (100.0%) 84.8Mb |
>Q10 |
27583 (96.6%) 82.0Mb |
>Q12 |
25638 (89.8%) 75.8Mb |
>Q15 |
22521 (78.9%) 66.2Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
42.2 (37) |
2 |
42.0 (473) |
3 |
42.0 (543) |
4 |
42.0 (576) |
5 |
42.0 (577) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
9258 (17.7) |
2 |
8713 (13.3) |
3 |
8427 (17.4) |
4 |
8402 (12.4) |
5 |
8394 (14.7) |
Summary statistics after filtering
General summary |
|
Mean read length |
2,969.3 |
Mean read quality |
21.9 |
Median read length |
3,790.0 |
Median read quality |
21.2 |
Number of reads |
28,548.0 |
Read length N50 |
3,870.0 |
STDEV read length |
1,318.8 |
Total bases |
84,768,339.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
28548 (100.0%) 84.8Mb |
>Q7 |
28548 (100.0%) 84.8Mb |
>Q10 |
27582 (96.6%) 82.0Mb |
>Q12 |
25637 (89.8%) 75.8Mb |
>Q15 |
22520 (78.9%) 66.2Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
42.2 (37) |
2 |
42.0 (473) |
3 |
42.0 (543) |
4 |
42.0 (576) |
5 |
42.0 (577) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
9258 (17.7) |
2 |
8713 (13.3) |
3 |
8427 (17.4) |
4 |
8402 (12.4) |
5 |
8394 (14.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation