NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,888.0 |
Mean read quality |
19.2 |
Median read length |
3,891.0 |
Median read quality |
19.5 |
Number of reads |
14,664.0 |
Read length N50 |
3,893.0 |
STDEV read length |
149.2 |
Total bases |
57,014,244.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
14664 (100.0%) 57.0Mb |
>Q7 |
14664 (100.0%) 57.0Mb |
>Q10 |
14178 (96.7%) 55.1Mb |
>Q12 |
13085 (89.2%) 50.9Mb |
>Q15 |
11363 (77.5%) 44.3Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
34.6 (3911) |
2 |
32.8 (3932) |
3 |
32.8 (3793) |
4 |
32.6 (3793) |
5 |
32.5 (3900) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4996 (15.5) |
2 |
4987 (16.6) |
3 |
4986 (20.0) |
4 |
4964 (18.3) |
5 |
4956 (25.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation