NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 3,888.0
Mean read quality 19.2
Median read length 3,891.0
Median read quality 19.5
Number of reads 14,664.0
Read length N50 3,893.0
STDEV read length 149.2
Total bases 57,014,244.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 14664 (100.0%) 57.0Mb
>Q7 14664 (100.0%) 57.0Mb
>Q10 14178 (96.7%) 55.1Mb
>Q12 13085 (89.2%) 50.9Mb
>Q15 11363 (77.5%) 44.3Mb
Top 5 highest mean basecall quality scores and their read lengths
1 34.6 (3911)
2 32.8 (3932)
3 32.8 (3793)
4 32.6 (3793)
5 32.5 (3900)
Top 5 longest reads and their mean basecall quality score
1 4996 (15.5)
2 4987 (16.6)
3 4986 (20.0)
4 4964 (18.3)
5 4956 (25.2)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality plot using a kernel density estimation