NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,986.3 |
Mean read quality |
20.9 |
Median read length |
3,776.0 |
Median read quality |
20.7 |
Number of reads |
25,253.0 |
Read length N50 |
3,869.0 |
STDEV read length |
1,254.8 |
Total bases |
75,413,521.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
25253 (100.0%) 75.4Mb |
>Q7 |
25253 (100.0%) 75.4Mb |
>Q10 |
24471 (96.9%) 73.0Mb |
>Q12 |
22833 (90.4%) 67.7Mb |
>Q15 |
20057 (79.4%) 59.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
42.0 (585) |
2 |
42.0 (616) |
3 |
42.0 (623) |
4 |
42.0 (639) |
5 |
42.0 (674) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
9857 (12.0) |
2 |
8526 (16.9) |
3 |
8472 (17.8) |
4 |
8365 (9.0) |
5 |
8131 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation