NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,005.7 |
Mean read quality |
19.2 |
Median read length |
3,905.0 |
Median read quality |
19.2 |
Number of reads |
11,583.0 |
Read length N50 |
3,950.0 |
STDEV read length |
258.6 |
Total bases |
46,398,151.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
11583 (100.0%) 46.4Mb |
>Q7 |
11583 (100.0%) 46.4Mb |
>Q10 |
11162 (96.4%) 44.7Mb |
>Q12 |
10196 (88.0%) 40.9Mb |
>Q15 |
8702 (75.1%) 34.9Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
35.5 (4231) |
2 |
35.2 (3883) |
3 |
34.4 (3613) |
4 |
34.4 (3873) |
5 |
34.2 (4085) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5000 (12.2) |
2 |
4996 (18.6) |
3 |
4996 (24.4) |
4 |
4994 (21.7) |
5 |
4993 (16.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation