NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,879.3 |
Mean read quality |
21.8 |
Median read length |
3,598.0 |
Median read quality |
20.8 |
Number of reads |
22,972.0 |
Read length N50 |
3,858.0 |
STDEV read length |
1,345.9 |
Total bases |
66,142,685.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
22972 (100.0%) 66.1Mb |
>Q7 |
22972 (100.0%) 66.1Mb |
>Q10 |
22221 (96.7%) 63.9Mb |
>Q12 |
20642 (89.9%) 58.9Mb |
>Q15 |
17986 (78.3%) 50.7Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
42.3 (20) |
2 |
42.3 (23) |
3 |
42.2 (26) |
4 |
42.0 (543) |
5 |
42.0 (555) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
17271 (9.3) |
2 |
8807 (13.2) |
3 |
8616 (11.6) |
4 |
8610 (10.2) |
5 |
8497 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation