NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 3,980.3
Mean read quality 18.2
Median read length 3,912.0
Median read quality 18.6
Number of reads 26,908.0
Read length N50 3,915.0
STDEV read length 247.5
Total bases 107,102,809.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 26908 (100.0%) 107.1Mb
>Q7 26908 (100.0%) 107.1Mb
>Q10 26076 (96.9%) 103.8Mb
>Q12 23878 (88.7%) 95.0Mb
>Q15 20297 (75.4%) 80.8Mb
Top 5 highest mean basecall quality scores and their read lengths
1 30.9 (3608)
2 30.6 (3823)
3 29.9 (3948)
4 29.8 (4169)
5 29.8 (3923)
Top 5 longest reads and their mean basecall quality score
1 5000 (14.7)
2 4990 (12.2)
3 4990 (17.4)
4 4989 (10.0)
5 4979 (17.9)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality plot using a kernel density estimation