NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,980.3 |
Mean read quality |
18.2 |
Median read length |
3,912.0 |
Median read quality |
18.6 |
Number of reads |
26,908.0 |
Read length N50 |
3,915.0 |
STDEV read length |
247.5 |
Total bases |
107,102,809.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
26908 (100.0%) 107.1Mb |
>Q7 |
26908 (100.0%) 107.1Mb |
>Q10 |
26076 (96.9%) 103.8Mb |
>Q12 |
23878 (88.7%) 95.0Mb |
>Q15 |
20297 (75.4%) 80.8Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
30.9 (3608) |
2 |
30.6 (3823) |
3 |
29.9 (3948) |
4 |
29.8 (4169) |
5 |
29.8 (3923) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5000 (14.7) |
2 |
4990 (12.2) |
3 |
4990 (17.4) |
4 |
4989 (10.0) |
5 |
4979 (17.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation