NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
3,384.4 |
Mean read quality |
18.3 |
Median read length |
3,877.0 |
Median read quality |
18.2 |
Number of reads |
37,850.0 |
Read length N50 |
3,906.0 |
STDEV read length |
1,247.7 |
Total bases |
128,098,849.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
37850 (100.0%) 128.1Mb |
>Q7 |
37850 (100.0%) 128.1Mb |
>Q10 |
35407 (93.5%) 123.1Mb |
>Q12 |
31758 (83.9%) 111.5Mb |
>Q15 |
26270 (69.4%) 93.2Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
42.0 (1091) |
2 |
42.0 (1092) |
3 |
42.0 (1150) |
4 |
42.0 (1184) |
5 |
42.0 (1220) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
10157 (8.9) |
2 |
9112 (10.9) |
3 |
9099 (13.6) |
4 |
9023 (10.2) |
5 |
8971 (13.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation