NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,247.9 |
Mean read quality |
11.0 |
Median read length |
4,261.0 |
Median read quality |
11.0 |
Number of reads |
4,578.0 |
Read length N50 |
4,270.0 |
STDEV read length |
196.3 |
Total bases |
19,447,027.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
4578 (100.0%) 19.4Mb |
>Q7 |
4578 (100.0%) 19.4Mb |
>Q10 |
3781 (82.6%) 16.1Mb |
>Q12 |
862 (18.8%) 3.7Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
14.0 (4385) |
2 |
14.0 (4410) |
3 |
13.9 (4054) |
4 |
13.9 (4211) |
5 |
13.8 (4363) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4998 (10.6) |
2 |
4846 (9.8) |
3 |
4815 (13.0) |
4 |
4810 (12.1) |
5 |
4806 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation