NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,274.5 |
Mean read quality |
11.0 |
Median read length |
4,264.0 |
Median read quality |
11.0 |
Number of reads |
4,617.0 |
Read length N50 |
4,273.0 |
STDEV read length |
377.1 |
Total bases |
19,735,349.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
4617 (100.0%) 19.7Mb |
>Q7 |
4617 (100.0%) 19.7Mb |
>Q10 |
3814 (82.6%) 16.4Mb |
>Q12 |
873 (18.9%) 3.8Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
14.0 (4385) |
2 |
14.0 (4410) |
3 |
13.9 (4054) |
4 |
13.9 (4211) |
5 |
13.8 (4363) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
11437 (10.4) |
2 |
9248 (10.7) |
3 |
9014 (12.0) |
4 |
8849 (11.8) |
5 |
8842 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation