NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,169.5 |
Mean read quality |
11.1 |
Median read length |
4,170.0 |
Median read quality |
11.1 |
Number of reads |
1,170.0 |
Read length N50 |
4,180.0 |
STDEV read length |
183.7 |
Total bases |
4,878,295.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1170 (100.0%) 4.9Mb |
>Q7 |
1170 (100.0%) 4.9Mb |
>Q10 |
1006 (86.0%) 4.2Mb |
>Q12 |
245 (20.9%) 1.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.6 (4195) |
2 |
13.6 (4144) |
3 |
13.6 (4121) |
4 |
13.5 (4266) |
5 |
13.5 (4091) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4978 (12.0) |
2 |
4967 (9.4) |
3 |
4865 (11.6) |
4 |
4843 (11.4) |
5 |
4827 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation